Publications
2019
Schneider I, Ellenberg J
PLoS Biol. 2019 Mar 6;17(3):e3000173. doi: 10.1371/journal.pbio.3000173
2018
Pękowska A, Klaus B, Xiang W, Severino J, Daigle N, Klein...
Cell Syst. 2018 Nov 28;7(5):482-495.e10. doi: 10.1016/j.cels.2018.09.003
2018
Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Pa...
Nat Methods. 2018 Nov;15(11):849-854. doi: 10.1038/s41592-018-0195-8
2018
Popovic D, Koch B, Kueblbeck M, Ellenberg J, Pelkmans L
Cell Syst. 2018 Oct 24;7(4):398-411.e6. doi: 10.1016/j.cels.2018.09.001
2018
Cai Y, Hossain MJ, Hériché JK, Politi AZ, Walther N, Koch...
Nature. 2018 Sep;561(7723):411-415. doi: 10.1038/s41586-018-0518-z
2018
Strauss S, Nickels PC, Strauss MT, Jimenez Sabinina V, El...
Nat Methods. 2018 Sep;15(9):685-688. doi: 10.1038/s41592-018-0105-0
2018
Ivanov MP, Ladurner R, Poser I, Beveridge R, Rampler E, H...
EMBO J. 2018 Aug 1;37(15). pii: e97150. doi: 10.15252/embj.201797150
2018
Reichmann J, Nijmeijer B, Hossain MJ, Eguren M, Schneider...
Science. 2018 Jul 13;361(6398):189-193. doi: 10.1126/science.aar7462.
2018
Koch B, Nijmeijer B, Kueblbeck M, Cai Y, Walther N, Ellen...
Nat Protoc. 2018 Jun;13(6):1465-1487. doi: 10.1038/nprot.2018.042
2018
Politi AZ, Cai Y, Walther N, Hossain MJ, Koch B, Wachsmut...
Nat Protoc. 2018 Jun;13(6):1445-1464. doi: 10.1038/nprot.2018.040
2018
Koch B, Nijmeijer B, Kueblbeck M, Cai Y, Walther N, Ellen...
Nat Protoc. 2018 Jun;13(6):1465-1487. doi: 10.1038/nprot.2018.042
2018
Li Y, Mund M, Hoess P, Deschamps J, Matti U, Nijmeijer B,...
Nat Methods. 2018 May;15(5):367-369. doi: 10.1038/nmeth.4661.
2018
Reichmann J, Eguren M, Lin Y, Schneider I, Ellenberg J
Methods Cell Biol. 2018;145:279-292. doi: 10.1016/bs.mcb.2018.03.030
2018
Otsuka S, Ellenberg J
FEBS Lett. 2018 Feb;592(4):475-488. doi: 10.1002/1873-3468.12905
2018
Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Se...
Nat Struct Mol Biol. 2018 Jan;25(1):21-28. doi: 10.1038/s41594-017-0001-9
2016
S Pedersen R, Karemore G, Gudjonsson T, Rask MB, Neumann ...
Nat Commun. 2016 Dec 15;7:13887. doi: 10.1038/ncomms13887
2016
Uhlen M, Bandrowski A, Carr S, Edwards A, Ellenberg J, Lu...
Nat Methods. 2016 Oct;13(10):823-7. doi: 10.1038/nmeth.3995
2016
Otsuka S, Bui KH, Schorb M, Hossain MJ, Politi AZ, Koch B...
Elife. 2016 Sep 15;5. pii: e19071. doi: 10.7554/eLife.19071
2016
Cuylen S, Blaukopf C, Politi AZ, Müller-Reichert T, Neuma...
Nature. 2016 Jun 29;535(7611):308-12. doi: 10.1038/nature18610
2016
Nagasaka K, Hossain MJ, Roberti MJ, Ellenberg J, Hirota T
Nat Cell Biol. 2016 Jun;18(6):692-9. doi: 10.1038/ncb3353
2016
Saliba AE, Vonkova I, Deghou S, Ceschia S, Tischer C, Kug...
Nat Protoc. 2016 Jun;11(6):1021-38. doi: 10.1038/nprot.2016.059
2016
Jupp S, Malone J, Burdett T, Heriche JK, Williams E, Elle...
J Biomed Semantics. 2016 May 18;7:28. doi: 10.1186/s13326-016-0074-0
2016
Strnad P, Gunther S, Reichmann J, Krzic U, Balazs B, de M...
Nat Methods. 2016 Feb;13(2):139-42. doi: 10.1038/nmeth.3690.
2015
Strnad P, Gunther S, Reichmann J, Krzic U, Balazs B, de M...
Nat Methods. 2015 Dec 14. doi: 10.1038/nmeth.3690. [Epub ahead of print]
2015
Mardin BR, Drainas AP, Waszak SM, Weischenfeldt J, Isokan...
Mol Syst Biol. 2015 Sep 28;11(9):828. doi: 10.15252/msb.20156505
2015
Vonkova I, Saliba AE, Deghou S, Anand K, Ceschia S, Doerk...
Cell Rep. 2015 Sep 1;12(9):1519-30. doi: 10.1016/j.celrep.2015.07.054
2015
Boni A, Politi AZ, Strnad P, Xiang W, Hossain MJ, Ellenbe...
J Cell Biol. 2015 Jun 8;209(5):705-20. doi: 10.1083/jcb.201409133
2015
Lees JG, Hériché JK, Morilla I, Fernández JM, Adler P, Kr...
Bioinformatics. 2015 Jun 15;31(12):2052-3. doi: 10.1093/bioinformatics/btv073
2015
Wachsmuth M, Conrad C, Bulkescher J, Koch B, Mahen R, Iso...
Nat Biotechnol. 2015 Mar 16. doi: 10.1038/nbt.3146. [Epub ahead of print]
2015
Solc P, Kitajima TS, Yoshida S, Brzakova A, Kaido M, Bara...
PLoS One. 2015 Feb 6;10(2):e0116783. doi: 10.1371/journal.pone.0116783
2014
Tegha-Dunghu J, Bausch E, Neumann B, Wuensche A, Walter T...
J Cell Sci. 2014 Dec 1;127(23):5007-13. doi: 10.1242/jcs.136457. Epub 2014 Oct 9
2014
van der Lelij P, Stocsits RR, Ladurner R, Petzold G, Krei...
EMBO J. 2014 Nov 18;33(22):2643-58. doi: 10.15252/embj.201488202. Epub 2014 Sep 25
2014
Mahen R, Koch B, Wachsmuth M, Politi AZ, Perez-Gonzalez A...
Mol Biol Cell. 2014 Nov 5;25(22):3610-8. doi: 10.1091/mbc.E14-06-1091. Epub 2014 Sep 17
2014
Rohn JL, Patel JV, Neumann B, Bulkescher J, Mchedlishvili...
Curr Biol. 2014 Nov 3;24(21):2598-605. doi: 10.1016/j.cub.2014.09.045. Epub 2014 Oct 23
2014
Hériché JK, Lees JG, Morilla I, Walter T, Petrova B, Robe...
Mol Biol Cell. 2014 Aug 15;25(16):2522-36. doi: 10.1091/mbc.E13-04-0221. Epub 2014 Jun 18
2014
Otsuka S, Szymborska A, Ellenberg J
Methods Cell Biol. 2014;122:219-38. doi: 10.1016/B978-0-12-417160-2.00010-2
2014
Keller D, Orpinell M, Olivier N, Wachsmuth M, Mahen R, Wy...
J Cell Biol. 2014 Mar 3;204(5):697-712. doi: 10.1083/jcb.201307049
2014
Saliba AE, Vonkova I, Ceschia S, Findlay GM, Maeda K, Tis...
Nat Methods. 2014 Jan;11(1):47-50. doi: 10.1038/nmeth.2734. Epub 2013 Nov 24
2013
Walter, A., Chapuis, C., Huet, S. & Ellenberg, J.
J Struct Biol. 2013 Oct 18. pii: S1047-8477(13)00269-4. doi:10.1016/j.jsb.2013.10.004.
2013
Pau G, Walter T, Neumann B, Hériché JK, Ellenberg J, Huber W
BMC Bioinformatics. 2013 Oct 16;14:308. doi: 10.1186/1471-2105-14-308
2013
Tedeschi, A., Wutz, G., Huet, S., Jaritz, M., Wuensche, A...
Nature. 2013 Sep 26;501(7468):564-8. doi: 10.1038/nature12471.
2013
Szymborska A, de Marco A, Daigle N, Cordes VC, Briggs JA,...
Science. 2013 Aug 9;341(6146):655-8. doi: 10.1126/science.1240672
2013
Mardin BR, Isokane M, Cosenza MR, Krämer A, Ellenberg J, ...
Dev Cell. 2013 May 13;25(3):229-40. doi: 10.1016/j.devcel.2013.03.012
2012
Scolz M, Widlund PO, Piazza S, Bublik DR, Reber S, Peche ...
PLoS One.
2012
Bancaud A, Lavelle C, Huet S, Ellenberg J
Nucleic Acids Res. 2012 Oct 1;40(18):8783-92. doi: 10.1093/nar/gks586
2012
Mall M, Walter T, Gorjánácz M, Davidson IF, Nga Ly-Hartig...
J Cell Biol. 2012 Sep 17;198(6):981-90
2012
Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, E...
Nat Cell Biol. 2012 Jun 3;14(7):764-74. doi: 10.1038/ncb2510
2012
Moudry P, Lukas C, Macurek L, Neumann B, Heriche JK, Pepp...
Cell Death Differ.
2011
Beck M, Schmidt A, Malmstroem J, Claassen M, Ori A, Szymb...
Mol Syst Biol. 2011 Nov 8;7:549. doi: 10.1038/msb.2011.82
2011
Kitajima TS, Ohsugi M, Ellenberg J
Cell. 2011 Aug 19;146(4):568-81
2011
Ritzerfeld J, Remmele S, Wang T, Temmerman K, Brügger B, ...
Genome Res. 2011 Nov;21(11):1955-68. doi: 10.1101/gr.116087.110
2011
Ng K, Daigle N, Bancaud A, Ohhata T, Humphreys P, Walker ...
Mol Biol Cell. 2011 Jul 15;22(14):2634-45
2011
Mori M, Monnier N, Daigle N, Bathe M, Ellenberg J, Lénárt P
Curr Biol. 2011 Apr 12;21(7):606-11
2011
Conrad C, Wünsche A, Tan TH, Bulkescher J, Sieckmann F, V...
Nat Methods. 2011 Mar;8(3):246-9.
2011
Bolhy S, Bouhlel I, Dultz E, Nayak T, Zuccolo M, Gatti X,...
J Cell Biol. 2011 Mar 7;192(5):855-71
2011
Sironi L, Solon J, Conrad C, Mayer TU, Brunner D, Ellenbe...
Cytoskeleton (Hoboken). 2011 May;68(5):266-78. doi: 10.1002/cm.20510
2010
Bancaud A, Huet S, Rabut G, Ellenberg J
Cold Spring Harb Protoc. 2010 Dec 1;2010(12):pdb.top90. doi: 10.1101/pdb.top90
2010
Landsverk HB, Mora-Bermúdez F, Landsverk OJ, Hasvold G, N...
EMBO Rep. 2010 Nov;11(11):868-75.
2010
Dultz E, Ellenberg J
J Cell Biol. 2010 Oct 4;191(1):15-22
2010
Held M, Schmitz MH, Fischer B, Walter T, Neumann B, Olma ...
Nat Methods. 2010 Sep;7(9):747-54
2010
Hutchins JR, Toyoda Y, Hegemann B, Poser I, Hériché JK, S...
Science. 2010 Apr 30;328(5978):593-9
2010
Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, C...
Nature. 2010 Apr 1;464(7289):721-7. doi: 10.1038/nature08869
2010
Walter T, Held M, Neumann B, Hériché JK, Conrad C, Pepper...
J Struct Biol. 2010 Apr;170(1):1-9
2010
Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE...
Nat Methods. 2010 Mar;7(3 Suppl):S26-41
2010
Huet S, Avilov SV, Ferbitz L, Daigle N, Cusack S, Ellenbe...
J Virol. 2010 Feb;84(3):1254-64
2010
Terjung S, Walter T, Seitz A, Neumann B, Pepperkok R, Ell...
In:" Live Cell Imaging: A Laboratory Manual", D Spector, R Goldman, J Swedlow (Eds.), Cold Spring Harbor Laboratory Press, 2010, 297-314
2009
Bancaud A, Huet S, Daigle N, Mozziconacci J, Beaudouin J,...
EMBO J. 2009 Dec 16;28(24):3785-98
2009
Harder N, Mora-Bermúdez F, Godinez WJ, Wünsche A, Eils R,...
Genome Res. 2009 Nov;19(11):2113-24
2009
Lu W, Gotzmann J, Sironi L, Jaeger VM, Schneider M, Lüke ...
Biochim Biophys Acta. 2008 Dec;1783(12):2415-26
2009
Doil C, Mailand N, Bekker-Jensen S, Menard P, Larsen DH, ...
Cell. 2009 Feb 6;136(3):435-46.
2008
Schuh M, Ellenberg J.
Curr Biol. 2008 Dec 23;18(24):1986-92
2008
Erfle H, Neumann B, Rogers P, Bulkescher J, Ellenberg J, ...
J Biomol Screen. 2008 Aug;13(7):575-80. doi: 10.1177/1087057108320133
2008
Antonin W, Ellenberg J, Dultz E
FEBS Lett. 2008 Jun 18;582(14):2004-16
2008
Tegha-Dunghu J, Neumann B, Reber S, Krause R, Erfle H, Wa...
J Cell Sci. 2008 May 15;121(Pt 10):1718-26. doi: 10.1242/jcs.019174
2008
Dultz E, Zanin E, Wurzenberger C, Braun M, Rabut G, Siron...
J Cell Biol. 2008 Mar 10;180(5):857-65
2007
Daigle N, Ellenberg J
Nat Methods. 2007 Aug;4(8):633-6
2007
Mora-Bermúdez F, Gerlich D, Ellenberg J.
Nat Cell Biol. 2007 Jul;9(7):822-31
2007
Simpson JC, Cetin C, Erfle H, Joggerst B, Liebel U, Ellen...
J Biotechnol. 2007 Apr 30;129(2):352-65
2007
Dultz E, Ellenberg J
Curr Biol. 2007 Mar 6;17(5):R154-6
2007
Tarendeau F, Boudet J, Guilligay D, Mas PJ, Bougault CM, ...
Nat Struct Mol Biol. 2007 Mar;14(3):229-33
2007
Mora-Bermúdez F, Ellenberg J
Methods. 2007 Feb;41(2):158-67
2007
Kim IH, Godinez WJ, Harder N, Mora-Bermudez F, Ellenberg ...
Proc. SPIE Medical Imaging 2007: Image Processing, SPIE Bellingham, WA/USA, Pluim, J.P.W. and Reinhardt, J.M., (Proc. SPIE): 65121R, 2007
2007
Erfle H, Neumann B, Liebel U, Rogers P, Held M, Walter T,...
Nat Protoc. 2007;2(2):392-9
2006
Neumann B, Held M, Liebel U, Erfle H, Rogers P, Pepperkok...
Nat Methods. 2006 May;3(5):385-90
2006
Erfle H, Liebel U, Neumann B, Ellenberg J, Pepperkok R
Analytika PRO, 2006, 20-23
2006
Erfle H, Liebel U, Neumann B, Pepperkok R, Ellenberg J
BIOspektrum · Sonderausgabe · 11. Jahrgang, 2006, 521
2006
Harder N, Neumann B, Held M, Liebel U, Erfle H, Ellenberg...
Proc. Workshop Bildverarbeitung f\, Springer-Verlag Berlin Heidelberg, Handels, H. and Ehrhardt, J. and Horsch, A. and Meinzer, H.-P. and Tolxdorff, T.(Informatik aktuell): 206-210, 2006
2006
Harder N, Neumann B, Held M, Liebel U, Erfle H, Ellenberg...
Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'2006), Kova\u{c}evi\'c, J. and Meijering, E.: 1016-1019, 2006
2006
Kovalev V, Harder N, Neumann B, Held M, Liebel U, Erfle H...
cvpr, vol. 1, pp.276-283, 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition - Volume 1 (CVPR'06), 2006
2006
Harder N, Mora-Bermúdez F, Godinez WJ, Ellenberg J, Eils ...
"Med Image Comput Comput Assist Interv. 2006;9(Pt 1):840-8."
2005
Lénárt P, Bacher CP, Daigle N, Hand AR, Eils R, Terasaki ...
"Nature. 2005 Aug 11;436(7052):812-8"
2003
Gerlich D, Beaudouin J, Kalbfuss B, Daigle N, Eils R, Ell...
"Cell. 2003 Mar 21;112(6):751-64."